J3_6Z6J_040

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6Z6J|1|C2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6J|1|C2|A|213
6Z6J|1|C2|G|214
6Z6J|1|C2|A|215
6Z6J|1|C2|U|216
6Z6J|1|C2|A|217
6Z6J|1|C2|A|218
6Z6J|1|C2|A|219
6Z6J|1|C2|A|220
6Z6J|1|C2|A|221
6Z6J|1|C2|A|222
6Z6J|1|C2|U|223
6Z6J|1|C2|C|224
6Z6J|1|C2|A|225
6Z6J|1|C2|A|226
6Z6J|1|C2|U|227
6Z6J|1|C2|G|228
*
6Z6J|1|C2|C|237
6Z6J|1|C2|U|238
6Z6J|1|C2|C|239
6Z6J|1|C2|U|240
6Z6J|1|C2|U|241
6Z6J|1|C2|U|242
6Z6J|1|C2|G|243
*
6Z6J|1|C2|C|250
6Z6J|1|C2|A|251
6Z6J|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A