J3_6Z6J_047

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6J_047 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1327

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

6Z6J|1|C2|A|760
6Z6J|1|C2|G|761
6Z6J|1|C2|A|762
6Z6J|1|C2|G|763
*
6Z6J|1|C2|C|773
6Z6J|1|C2|A|774
6Z6J|1|C2|G|775
*
6Z6J|1|C2|U|785
6Z6J|1|C2|C|786
6Z6J|1|C2|G|787
6Z6J|1|C2|A|788
6Z6J|1|C2|A|789
6Z6J|1|C2|U|790

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A