J3_6Z6K_024

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GCCG

Length

24 nucleotides

Bulged bases

6Z6K|1|C2|G|1199, 6Z6K|1|C2|G|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6K|1|C2|C|1180
6Z6K|1|C2|U|1181
6Z6K|1|C2|U|1182
6Z6K|1|C2|A|1183
6Z6K|1|C2|A|1184
6Z6K|1|C2|U|1185
6Z6K|1|C2|U|1186
6Z6K|1|C2|U|1187
*
6Z6K|1|C2|G|1198
6Z6K|1|C2|G|1199
6Z6K|1|C2|G|1200
6Z6K|1|C2|G|1201
6Z6K|1|C2|A|1202
6Z6K|1|C2|A|1203
6Z6K|1|C2|A|1204
6Z6K|1|C2|C|1205
6Z6K|1|C2|U|1206
6Z6K|1|C2|C|1207
6Z6K|1|C2|A|1208
6Z6K|1|C2|C|1209
*
6Z6K|1|C2|G|1455
6Z6K|1|C2|C|1456
6Z6K|1|C2|C|1457
6Z6K|1|C2|G|1458

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29-A