J3_6Z6K_036
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAC*GUAACU*AG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6K_036 not in the Motif Atlas
- Homologous match to J3_8P9A_057
- Geometric discrepancy: 0.1375
- The information below is about J3_8P9A_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6K|1|C1|C|1631
6Z6K|1|C1|A|1632
6Z6K|1|C1|C|1633
*
6Z6K|1|C1|G|1640
6Z6K|1|C1|U|1641
6Z6K|1|C1|A|1642
6Z6K|1|C1|A|1643
6Z6K|1|C1|C|1644
6Z6K|1|C1|U|1645
*
6Z6K|1|C1|A|1810
6Z6K|1|C1|G|1811
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LZ
- 60S ribosomal protein L27-A
- Chain Lg
- 60S ribosomal protein L34-A
- Chain Lk
- 60S ribosomal protein L38
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