J3_6Z6K_041

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6Z6K|1|C2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6K|1|C2|A|213
6Z6K|1|C2|G|214
6Z6K|1|C2|A|215
6Z6K|1|C2|U|216
6Z6K|1|C2|A|217
6Z6K|1|C2|A|218
6Z6K|1|C2|A|219
6Z6K|1|C2|A|220
6Z6K|1|C2|A|221
6Z6K|1|C2|A|222
6Z6K|1|C2|U|223
6Z6K|1|C2|C|224
6Z6K|1|C2|A|225
6Z6K|1|C2|A|226
6Z6K|1|C2|U|227
6Z6K|1|C2|G|228
*
6Z6K|1|C2|C|237
6Z6K|1|C2|U|238
6Z6K|1|C2|C|239
6Z6K|1|C2|U|240
6Z6K|1|C2|U|241
6Z6K|1|C2|U|242
6Z6K|1|C2|G|243
*
6Z6K|1|C2|C|250
6Z6K|1|C2|A|251
6Z6K|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A