J3_6Z6L_035
3D structure
- PDB id
- 6Z6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human CCDC124 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 6Z6L|1|L5|C|2470, 6Z6L|1|L5|A|2472, 6Z6L|1|L5|G|2475, 6Z6L|1|L5|G|2503, 6Z6L|1|L5|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6L_035 not in the Motif Atlas
- Homologous match to J3_8CRE_016
- Geometric discrepancy: 0.5954
- The information below is about J3_8CRE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_65403.1
- Basepair signature
- cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6Z6L|1|L5|A|2451
6Z6L|1|L5|G|2452
6Z6L|1|L5|A|2453
6Z6L|1|L5|U|2454
6Z6L|1|L5|G|2455
6Z6L|1|L5|G|2456
*
6Z6L|1|L5|C|2465
6Z6L|1|L5|G|2466
6Z6L|1|L5|U|2467
6Z6L|1|L5|U|2468
6Z6L|1|L5|C|2469
6Z6L|1|L5|C|2470
6Z6L|1|L5|G|2471
6Z6L|1|L5|A|2472
6Z6L|1|L5|A|2473
6Z6L|1|L5|G|2474
6Z6L|1|L5|G|2475
6Z6L|1|L5|G|2476
*
6Z6L|1|L5|C|2501
6Z6L|1|L5|G|2502
6Z6L|1|L5|G|2503
6Z6L|1|L5|C|2504
6Z6L|1|L5|C|2505
6Z6L|1|L5|G|2506
6Z6L|1|L5|A|2507
6Z6L|1|L5|U|2508
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
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