J3_6Z6M_001

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6Z6M|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|L5|C|112
6Z6M|1|L5|A|113
6Z6M|1|L5|G|114
6Z6M|1|L5|C|115
6Z6M|1|L5|G|116
*
6Z6M|1|L5|C|155
6Z6M|1|L5|G|156
6Z6M|1|L5|U|157
6Z6M|1|L5|A|158
6Z6M|1|L5|C|159
6Z6M|1|L5|G|160
*
6Z6M|1|L5|C|275
6Z6M|1|L5|C|276
6Z6M|1|L5|G|277
6Z6M|1|L5|G|278

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36