J3_6Z6M_003

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6Z6M|1|L5|C|962, 6Z6M|1|L5|C|967, 6Z6M|1|L5|U|971, 6Z6M|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|L5|C|712
6Z6M|1|L5|C|713
*
6Z6M|1|L5|G|955
6Z6M|1|L5|A|956
6Z6M|1|L5|G|957
6Z6M|1|L5|G|958
6Z6M|1|L5|G|959
6Z6M|1|L5|A|960
6Z6M|1|L5|G|961
6Z6M|1|L5|C|962
6Z6M|1|L5|G|963
6Z6M|1|L5|A|964
6Z6M|1|L5|G|965
6Z6M|1|L5|A|966
6Z6M|1|L5|C|967
6Z6M|1|L5|C|968
6Z6M|1|L5|C|969
6Z6M|1|L5|G|970
6Z6M|1|L5|U|971
6Z6M|1|L5|C|972
6Z6M|1|L5|G|973
6Z6M|1|L5|C|974
6Z6M|1|L5|C|975
6Z6M|1|L5|G|976
*
6Z6M|1|L5|C|1278
6Z6M|1|L5|A|1279
6Z6M|1|L5|C|1280
6Z6M|1|L5|G|1281
6Z6M|1|L5|G|1282
6Z6M|1|L5|G|1283
6Z6M|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32