J3_6Z6M_025
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6Z6M|1|S2|G|1256, 6Z6M|1|S2|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6M_025 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0966
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Z6M|1|S2|C|1237
6Z6M|1|S2|U|1238
6Z6M|1|S2|U|1239
6Z6M|1|S2|A|1240
6Z6M|1|S2|A|1241
6Z6M|1|S2|U|1242
6Z6M|1|S2|U|1243
6Z6M|1|S2|U|1244
*
6Z6M|1|S2|G|1255
6Z6M|1|S2|G|1256
6Z6M|1|S2|G|1257
6Z6M|1|S2|A|1258
6Z6M|1|S2|A|1259
6Z6M|1|S2|A|1260
6Z6M|1|S2|C|1261
6Z6M|1|S2|C|1262
6Z6M|1|S2|U|1263
6Z6M|1|S2|C|1264
6Z6M|1|S2|A|1265
6Z6M|1|S2|C|1266
*
6Z6M|1|S2|G|1516
6Z6M|1|S2|G|1517
6Z6M|1|S2|C|1518
6Z6M|1|S2|U|1519
6Z6M|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
Coloring options: