J3_6Z6M_034

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

6Z6M|1|L5|C|704, 6Z6M|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|L5|C|451
6Z6M|1|L5|A|452
6Z6M|1|L5|G|453
6Z6M|1|L5|U|454
6Z6M|1|L5|C|455
*
6Z6M|1|L5|G|701
6Z6M|1|L5|U|702
6Z6M|1|L5|G|703
6Z6M|1|L5|C|704
6Z6M|1|L5|G|705
*
6Z6M|1|L5|C|1292
6Z6M|1|L5|G|1293
6Z6M|1|L5|A|1294
6Z6M|1|L5|C|1295
6Z6M|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a