J3_6Z6N_024
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUC*GCUG
- Length
- 22 nucleotides
- Bulged bases
- 6Z6N|1|S2|G|1256, 6Z6N|1|S2|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6N|1|S2|C|1237
6Z6N|1|S2|U|1238
6Z6N|1|S2|U|1239
6Z6N|1|S2|A|1240
6Z6N|1|S2|A|1241
6Z6N|1|S2|U|1242
6Z6N|1|S2|U|1243
6Z6N|1|S2|U|1244
*
6Z6N|1|S2|G|1255
6Z6N|1|S2|G|1256
6Z6N|1|S2|G|1257
6Z6N|1|S2|A|1258
6Z6N|1|S2|A|1259
6Z6N|1|S2|A|1260
6Z6N|1|S2|C|1261
6Z6N|1|S2|C|1262
6Z6N|1|S2|U|1263
6Z6N|1|S2|C|1264
*
6Z6N|1|S2|G|1517
6Z6N|1|S2|C|1518
6Z6N|1|S2|U|1519
6Z6N|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
Coloring options: