J3_6Z6N_031

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6Z6N|1|L5|A|218, 6Z6N|1|L5|G|219, 6Z6N|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|C|196
6Z6N|1|L5|A|197
6Z6N|1|L5|A|198
6Z6N|1|L5|G|199
*
6Z6N|1|L5|C|215
6Z6N|1|L5|C|216
6Z6N|1|L5|C|217
6Z6N|1|L5|A|218
6Z6N|1|L5|G|219
6Z6N|1|L5|C|220
6Z6N|1|L5|C|221
6Z6N|1|L5|C|222
6Z6N|1|L5|G|223
6Z6N|1|L5|U|224
6Z6N|1|L5|G|225
6Z6N|1|L5|G|226
6Z6N|1|L5|A|227
6Z6N|1|L5|C|228
*
6Z6N|1|L5|G|240
6Z6N|1|L5|G|241
6Z6N|1|L5|U|242
6Z6N|1|L5|A|243
6Z6N|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26