J3_6Z6N_038
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 6Z6N|1|L5|G|4115, 6Z6N|1|L5|C|4116, 6Z6N|1|L5|U|4117, 6Z6N|1|L5|U|4118, 6Z6N|1|L5|C|4119, 6Z6N|1|L5|U|4120, 6Z6N|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z6N|1|L5|G|4091
6Z6N|1|L5|G|4092
6Z6N|1|L5|G|4093
6Z6N|1|L5|G|4094
6Z6N|1|L5|G|4095
6Z6N|1|L5|C|4096
6Z6N|1|L5|G|4097
*
6Z6N|1|L5|C|4112
6Z6N|1|L5|U|4113
6Z6N|1|L5|C|4114
6Z6N|1|L5|G|4115
6Z6N|1|L5|C|4116
6Z6N|1|L5|U|4117
6Z6N|1|L5|U|4118
6Z6N|1|L5|C|4119
6Z6N|1|L5|U|4120
6Z6N|1|L5|G|4121
6Z6N|1|L5|G|4122
6Z6N|1|L5|C|4123
6Z6N|1|L5|G|4124
6Z6N|1|L5|C|4125
6Z6N|1|L5|C|4126
6Z6N|1|L5|A|4127
6Z6N|1|L5|A|4128
6Z6N|1|L5|G|4129
*
6Z6N|1|L5|C|4155
6Z6N|1|L5|G|4156
6Z6N|1|L5|A|4157
6Z6N|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
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