J3_6ZJ3_002
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- C(PSU)(PSU)C*GCUAUG*CCCG
- Length
- 14 nucleotides
- Bulged bases
- 6ZJ3|1|LC|U|339, 6ZJ3|1|LC|C|470, 6ZJ3|1|LC|C|471
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LB|C|279
6ZJ3|1|LB|PSU|280
6ZJ3|1|LB|PSU|281
6ZJ3|1|LB|C|282
*
6ZJ3|1|LC|G|335
6ZJ3|1|LC|C|336
6ZJ3|1|LC|U|337
6ZJ3|1|LC|A|338
6ZJ3|1|LC|U|339
6ZJ3|1|LC|G|340
*
6ZJ3|1|LC|C|469
6ZJ3|1|LC|C|470
6ZJ3|1|LC|C|471
6ZJ3|1|LC|G|472
Current chains
- Chain LB
- LSU rRNA chain 1
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain LV
- 60S ribosomal protein L7a
- Chain LX
- Ribosomal protein eL13
- Chain Lb
- Ribosomal protein eL15
- Chain Lp
- Ribosomal protein uL29
- Chain Lx
- Ribosomal protein eL36
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