J3_6ZJ3_005
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGGAG(OMU)G*CUC*GC(PSU)UG
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|LF|A|1896
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LF|C|1892
6ZJ3|1|LF|U|1893
6ZJ3|1|LF|G|1894
6ZJ3|1|LF|G|1895
6ZJ3|1|LF|A|1896
6ZJ3|1|LF|G|1897
6ZJ3|1|LF|OMU|1898
6ZJ3|1|LF|G|1899
*
6ZJ3|1|LH|C|2314
6ZJ3|1|LH|U|2315
6ZJ3|1|LH|C|2316
*
6ZJ3|1|LH|G|2328
6ZJ3|1|LH|C|2329
6ZJ3|1|LH|PSU|2330
6ZJ3|1|LH|U|2331
6ZJ3|1|LH|G|2332
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- LSU rRNA chain 6
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lf
- Ribosomal protein eL19
- Chain Lt
- Ribosomal protein eL31
- Chain Lw
- Ribosomal protein eL34
Coloring options: