J3_6ZJ3_008
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GCUGGUCG*CCC*GAUUCC
- Length
- 17 nucleotides
- Bulged bases
- 6ZJ3|1|LG|U|2057, 6ZJ3|1|LG|C|2058, 6ZJ3|1|LH|U|2263, 6ZJ3|1|LH|C|2264
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LG|G|2039
6ZJ3|1|LG|C|2040
6ZJ3|1|LG|U|2041
6ZJ3|1|LG|G|2055
6ZJ3|1|LG|G|2056
6ZJ3|1|LG|U|2057
6ZJ3|1|LG|C|2058
6ZJ3|1|LG|G|2059
*
6ZJ3|1|LG|C|2070
6ZJ3|1|LG|C|2071
6ZJ3|1|LG|C|2083
*
6ZJ3|1|LH|G|2260
6ZJ3|1|LH|A|2261
6ZJ3|1|LH|U|2262
6ZJ3|1|LH|U|2263
6ZJ3|1|LH|C|2264
6ZJ3|1|LH|C|2278
Current chains
- Chain LG
- LSU rRNA chain 6
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- Ribosomal protein eL27
- Chain Lw
- Ribosomal protein eL34
- Chain Lz
- Ribosomal protein eL38
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