J3_6ZJ3_010
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAGC*GAUUCAUGCACCAAG*CGAC
- Length
- 23 nucleotides
- Bulged bases
- 6ZJ3|1|LI|A|3088, 6ZJ3|1|LI|U|3089, 6ZJ3|1|LI|U|3090, 6ZJ3|1|LI|U|3093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LI|G|3030
6ZJ3|1|LI|A|3031
6ZJ3|1|LI|G|3032
6ZJ3|1|LI|C|3033
*
6ZJ3|1|LI|G|3087
6ZJ3|1|LI|A|3088
6ZJ3|1|LI|U|3089
6ZJ3|1|LI|U|3090
6ZJ3|1|LI|C|3091
6ZJ3|1|LI|A|3092
6ZJ3|1|LI|U|3093
6ZJ3|1|LI|G|3094
6ZJ3|1|LI|C|3095
6ZJ3|1|LI|A|3096
6ZJ3|1|LI|C|3097
6ZJ3|1|LI|C|3098
6ZJ3|1|LI|A|3099
6ZJ3|1|LI|A|3100
6ZJ3|1|LI|G|3101
*
6ZJ3|1|LI|C|3125
6ZJ3|1|LI|G|3126
6ZJ3|1|LI|A|3127
6ZJ3|1|LI|C|3128
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L5
- Ribosomal protein eL42
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain LV
- 60S ribosomal protein L7a
- Chain Lk
- Ribosomal protein uL23
- Chain Ln
- Ribosomal protein eL27
- Chain Ls
- Ribosomal protein eL30
- Chain Lw
- Ribosomal protein eL34
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