J3_6ZJ3_018

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGCC*GC*GCCGCAG

Length

13 nucleotides

Bulged bases

6ZJ3|1|S1|C|347, 6ZJ3|1|S1|A|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|U|269
6ZJ3|1|S1|G|270
6ZJ3|1|S1|C|271
6ZJ3|1|S1|C|272
*
6ZJ3|1|S1|G|333
6ZJ3|1|S1|C|334
*
6ZJ3|1|S1|G|343
6ZJ3|1|S1|C|344
6ZJ3|1|S1|C|345
6ZJ3|1|S1|G|346
6ZJ3|1|S1|C|347
6ZJ3|1|S1|A|348
6ZJ3|1|S1|G|349

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SK

Ribosomal protein eS8