J3_6ZJ3_019

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUGC*GUGAUG*CG

Length

12 nucleotides

Bulged bases

6ZJ3|1|S1|U|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|C|737
6ZJ3|1|S1|U|738
6ZJ3|1|S1|G|739
6ZJ3|1|S1|C|740
*
6ZJ3|1|S1|G|1257
6ZJ3|1|S1|U|1258
6ZJ3|1|S1|G|1259
6ZJ3|1|S1|A|1260
6ZJ3|1|S1|U|1261
6ZJ3|1|S1|G|1262
*
6ZJ3|1|S1|C|1362
6ZJ3|1|S1|G|1363

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SI

Ribosomal protein eS7

Chain SJ

Ribosomal protein uS8

Chain SP

Ribosomal protein uS12

Chain ST

Ribosomal protein uS15

Chain SU

Ribosomal protein uS17

Chain Sc

Ribosomal protein eS27