J3_6ZJ3_020

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AGUG*CAUC*GC(PSU)GAAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|A|1040
6ZJ3|1|S1|G|1041
6ZJ3|1|S1|U|1042
6ZJ3|1|S1|G|1043
*
6ZJ3|1|S1|C|1053
6ZJ3|1|S1|A|1054
6ZJ3|1|S1|U|1055
6ZJ3|1|S1|C|1056
*
6ZJ3|1|S1|G|1066
6ZJ3|1|S1|C|1067
6ZJ3|1|S1|PSU|1068
6ZJ3|1|S1|G|1069
6ZJ3|1|S1|A|1070
6ZJ3|1|S1|A|1071
6ZJ3|1|S1|U|1072

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SE

Ribosomal protein eS4

Chain SZ

Ribosomal protein eS24