J3_6ZJ3_023

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAAG*CUAGUAUG*CCGAU(PSU)GUG

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|C|1571
6ZJ3|1|S1|A|1572
6ZJ3|1|S1|A|1573
6ZJ3|1|S1|G|1574
*
6ZJ3|1|S1|C|2084
6ZJ3|1|S1|U|2085
6ZJ3|1|S1|A|2086
6ZJ3|1|S1|G|2087
6ZJ3|1|S1|U|2088
6ZJ3|1|S1|A|2089
6ZJ3|1|S1|U|2090
6ZJ3|1|S1|G|2091
*
6ZJ3|1|S1|C|2111
6ZJ3|1|S1|C|2112
6ZJ3|1|S1|G|2113
6ZJ3|1|S1|A|2114
6ZJ3|1|S1|U|2115
6ZJ3|1|S1|PSU|2116
6ZJ3|1|S1|G|2117
6ZJ3|1|S1|U|2118
6ZJ3|1|S1|G|2119

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S4

Transfer RNA; tRNA

Chain SH

Ribosomal protein uS7

Chain SL

Ribosomal protein uS9

Chain Sd

Ribosomal protein eS28