J3_6ZJ3_025
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- C(PSU)(PSU)AAUU(UR3)G*CGGGGAAUG(OMU)UAC*GGCCG
- Length
- 27 nucleotides
- Bulged bases
- 6ZJ3|1|S1|G|1609, 6ZJ3|1|S1|G|1611
- QA status
- Modified nucleotides: PSU, UR3, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|S1|C|1590
6ZJ3|1|S1|PSU|1591
6ZJ3|1|S1|PSU|1592
6ZJ3|1|S1|A|1593
6ZJ3|1|S1|A|1594
6ZJ3|1|S1|U|1595
6ZJ3|1|S1|U|1596
6ZJ3|1|S1|UR3|1597
6ZJ3|1|S1|G|1598
*
6ZJ3|1|S1|C|1607
6ZJ3|1|S1|G|1608
6ZJ3|1|S1|G|1609
6ZJ3|1|S1|G|1610
6ZJ3|1|S1|G|1611
6ZJ3|1|S1|A|1612
6ZJ3|1|S1|A|1613
6ZJ3|1|S1|U|1614
6ZJ3|1|S1|G|1615
6ZJ3|1|S1|OMU|1616
6ZJ3|1|S1|U|1617
6ZJ3|1|S1|A|1618
6ZJ3|1|S1|C|1619
*
6ZJ3|1|S1|G|1939
6ZJ3|1|S1|G|1940
6ZJ3|1|S1|C|1941
6ZJ3|1|S1|C|1942
6ZJ3|1|S1|G|1943
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain SL
- Ribosomal protein uS9
- Chain SM
- Ribosomal protein uS10
- Chain SR
- Ribosomal protein uS13
- Chain SS
- Ribosomal protein uS14
- Chain SW
- Ribosomal protein uS19
Coloring options: