J3_6ZJ3_026

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(PSU)(OMC)AGGAC*GGACG*CCAGAUGUC

Length

22 nucleotides

Bulged bases

6ZJ3|1|S1|G|1627, 6ZJ3|1|S1|G|1930

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|G|1623
6ZJ3|1|S1|PSU|1624
6ZJ3|1|S1|OMC|1625
6ZJ3|1|S1|A|1626
6ZJ3|1|S1|G|1627
6ZJ3|1|S1|G|1628
6ZJ3|1|S1|A|1629
6ZJ3|1|S1|C|1630
*
6ZJ3|1|S1|G|1673
6ZJ3|1|S1|G|1674
6ZJ3|1|S1|A|1675
6ZJ3|1|S1|C|1676
6ZJ3|1|S1|G|1677
*
6ZJ3|1|S1|C|1927
6ZJ3|1|S1|C|1928
6ZJ3|1|S1|A|1929
6ZJ3|1|S1|G|1930
6ZJ3|1|S1|A|1931
6ZJ3|1|S1|U|1932
6ZJ3|1|S1|G|1933
6ZJ3|1|S1|U|1934
6ZJ3|1|S1|C|1935

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SN

Ribosomal protein eS10

Chain SS

Ribosomal protein uS14

Chain SW

Ribosomal protein uS19

Chain Sf

Ribosomal protein eS31