J3_6ZJ3_029

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUCGACAUG*CC*GAAAUC

Length

17 nucleotides

Bulged bases

6ZJ3|1|S1|G|1976, 6ZJ3|1|S1|U|1980, 6ZJ3|1|S1|A|2019, 6ZJ3|1|S1|U|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|G|1973
6ZJ3|1|S1|U|1974
6ZJ3|1|S1|C|1975
6ZJ3|1|S1|G|1976
6ZJ3|1|S1|A|1977
6ZJ3|1|S1|C|1978
6ZJ3|1|S1|A|1979
6ZJ3|1|S1|U|1980
6ZJ3|1|S1|G|1981
*
6ZJ3|1|S1|C|1996
6ZJ3|1|S1|C|1997
*
6ZJ3|1|S1|G|2016
6ZJ3|1|S1|A|2017
6ZJ3|1|S1|A|2018
6ZJ3|1|S1|A|2019
6ZJ3|1|S1|U|2020
6ZJ3|1|S1|C|2021

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SC

Ribosomal protein uS3

Chain SM

Ribosomal protein uS10

Chain SN

Ribosomal protein eS10

Chain SS

Ribosomal protein uS14