J3_6ZJ3_032
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AC*GAUACGUUC*GGACAA(A2M)GGAACAGCU
- Length
- 27 nucleotides
- Bulged bases
- 6ZJ3|1|LA|U|59, 6ZJ3|1|LA|C|61, 6ZJ3|1|LA|G|92, 6ZJ3|1|LA|G|99
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LA|A|42
6ZJ3|1|LA|C|43
*
6ZJ3|1|LA|G|57
6ZJ3|1|LA|A|58
6ZJ3|1|LA|U|59
6ZJ3|1|LA|A|60
6ZJ3|1|LA|C|61
6ZJ3|1|LA|G|62
6ZJ3|1|LA|U|63
6ZJ3|1|LA|U|64
6ZJ3|1|LA|C|65
*
6ZJ3|1|LA|G|91
6ZJ3|1|LA|G|92
6ZJ3|1|LA|A|93
6ZJ3|1|LA|C|94
6ZJ3|1|LA|A|95
6ZJ3|1|LA|A|96
6ZJ3|1|LA|A2M|97
6ZJ3|1|LA|G|98
6ZJ3|1|LA|G|99
6ZJ3|1|LA|A|100
6ZJ3|1|LA|A|101
6ZJ3|1|LA|C|102
6ZJ3|1|LA|A|103
6ZJ3|1|LA|G|104
6ZJ3|1|LA|C|105
6ZJ3|1|LA|U|106
Current chains
- Chain LA
- 5.8S rRNA
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lk
- Ribosomal protein uL23
- Chain Ll
- Ribosomal protein uL24
- Chain Lp
- Ribosomal protein uL29
- Chain Ly
- Ribosomal protein eL37
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