J3_6ZJ3_034
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AA(OMG)*CCGAACAA(OMC)CAAAGC*GGAA(OMU)
- Length
- 23 nucleotides
- Bulged bases
- 6ZJ3|1|LF|OMC|1976, 6ZJ3|1|LF|A|1978, 6ZJ3|1|LF|G|1981
- QA status
- Modified nucleotides: OMG, OMC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LF|A|1954
6ZJ3|1|LF|A|1955
6ZJ3|1|LF|OMG|1956
*
6ZJ3|1|LF|C|1968
6ZJ3|1|LF|C|1969
6ZJ3|1|LF|G|1970
6ZJ3|1|LF|A|1971
6ZJ3|1|LF|A|1972
6ZJ3|1|LF|C|1973
6ZJ3|1|LF|A|1974
6ZJ3|1|LF|A|1975
6ZJ3|1|LF|OMC|1976
6ZJ3|1|LF|C|1977
6ZJ3|1|LF|A|1978
6ZJ3|1|LF|A|1979
6ZJ3|1|LF|A|1980
6ZJ3|1|LF|G|1981
6ZJ3|1|LF|C|1982
*
6ZJ3|1|LG|G|1995
6ZJ3|1|LG|G|1996
6ZJ3|1|LG|A|1997
6ZJ3|1|LG|A|1998
6ZJ3|1|LG|OMU|1999
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LG
- LSU rRNA chain 6
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain LV
- 60S ribosomal protein L7a
- Chain Lb
- Ribosomal protein eL15
- Chain Lk
- Ribosomal protein uL23
- Chain Ly
- Ribosomal protein eL37
Coloring options: