J3_6ZJ3_042

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAC*GACAACCU*GAUC

Length

15 nucleotides

Bulged bases

6ZJ3|1|S1|A|1148, 6ZJ3|1|S1|A|1149, 6ZJ3|1|S1|C|1150, 6ZJ3|1|S1|C|1151, 6ZJ3|1|S1|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|G|1099
6ZJ3|1|S1|A|1100
6ZJ3|1|S1|C|1101
*
6ZJ3|1|S1|G|1145
6ZJ3|1|S1|A|1146
6ZJ3|1|S1|C|1147
6ZJ3|1|S1|A|1148
6ZJ3|1|S1|A|1149
6ZJ3|1|S1|C|1150
6ZJ3|1|S1|C|1151
6ZJ3|1|S1|U|1152
*
6ZJ3|1|S1|G|1249
6ZJ3|1|S1|A|1250
6ZJ3|1|S1|U|1251
6ZJ3|1|S1|C|1252

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Lf

Ribosomal protein eL19

Chain SI

Ribosomal protein eS7

Chain ST

Ribosomal protein uS15