J3_6ZJ3_043

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

C(PSU)(PSU)AAUU(UR3)*GGGGAAUG(OMU)UAC*GGCCG

Length

25 nucleotides

Bulged bases

6ZJ3|1|S1|G|1609, 6ZJ3|1|S1|G|1611, 6ZJ3|1|S1|A|1613

QA status

Modified nucleotides: PSU, UR3, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZJ3_043 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.1842

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZJ3|1|S1|C|1590
6ZJ3|1|S1|PSU|1591
6ZJ3|1|S1|PSU|1592
6ZJ3|1|S1|A|1593
6ZJ3|1|S1|A|1594
6ZJ3|1|S1|U|1595
6ZJ3|1|S1|U|1596
6ZJ3|1|S1|UR3|1597
*
6ZJ3|1|S1|G|1608
6ZJ3|1|S1|G|1609
6ZJ3|1|S1|G|1610
6ZJ3|1|S1|G|1611
6ZJ3|1|S1|A|1612
6ZJ3|1|S1|A|1613
6ZJ3|1|S1|U|1614
6ZJ3|1|S1|G|1615
6ZJ3|1|S1|OMU|1616
6ZJ3|1|S1|U|1617
6ZJ3|1|S1|A|1618
6ZJ3|1|S1|C|1619
*
6ZJ3|1|S1|G|1939
6ZJ3|1|S1|G|1940
6ZJ3|1|S1|C|1941
6ZJ3|1|S1|C|1942
6ZJ3|1|S1|G|1943

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S2

Transfer RNA; tRNA

Chain SL

Ribosomal protein uS9

Chain SM

Ribosomal protein uS10

Chain SR

Ribosomal protein uS13

Chain SS

Ribosomal protein uS14

Chain SW

Ribosomal protein uS19