J3_6ZM7_003

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6ZM7|1|L5|C|967, 6ZM7|1|L5|C|968, 6ZM7|1|L5|C|969, 6ZM7|1|L5|U|971, 6ZM7|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|712
6ZM7|1|L5|C|713
*
6ZM7|1|L5|G|955
6ZM7|1|L5|A|956
6ZM7|1|L5|G|957
6ZM7|1|L5|G|958
6ZM7|1|L5|G|959
6ZM7|1|L5|A|960
6ZM7|1|L5|G|961
6ZM7|1|L5|C|962
6ZM7|1|L5|G|963
6ZM7|1|L5|A|964
6ZM7|1|L5|G|965
6ZM7|1|L5|A|966
6ZM7|1|L5|C|967
6ZM7|1|L5|C|968
6ZM7|1|L5|C|969
6ZM7|1|L5|G|970
6ZM7|1|L5|U|971
6ZM7|1|L5|C|972
6ZM7|1|L5|G|973
6ZM7|1|L5|C|974
6ZM7|1|L5|C|975
6ZM7|1|L5|G|976
*
6ZM7|1|L5|C|1278
6ZM7|1|L5|A|1279
6ZM7|1|L5|C|1280
6ZM7|1|L5|G|1281
6ZM7|1|L5|G|1282
6ZM7|1|L5|G|1283
6ZM7|1|L5|G|1284

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32