J3_6ZM7_032

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6ZM7|1|L5|A|218, 6ZM7|1|L5|G|219, 6ZM7|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|196
6ZM7|1|L5|A|197
6ZM7|1|L5|A|198
6ZM7|1|L5|G|199
*
6ZM7|1|L5|C|215
6ZM7|1|L5|C|216
6ZM7|1|L5|C|217
6ZM7|1|L5|A|218
6ZM7|1|L5|G|219
6ZM7|1|L5|C|220
6ZM7|1|L5|C|221
6ZM7|1|L5|C|222
6ZM7|1|L5|G|223
6ZM7|1|L5|U|224
6ZM7|1|L5|G|225
6ZM7|1|L5|G|226
6ZM7|1|L5|A|227
6ZM7|1|L5|C|228
*
6ZM7|1|L5|G|240
6ZM7|1|L5|G|241
6ZM7|1|L5|U|242
6ZM7|1|L5|A|243
6ZM7|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26