J3_6ZM7_035

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

6ZM7|1|L5|C|704, 6ZM7|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|451
6ZM7|1|L5|A|452
6ZM7|1|L5|G|453
6ZM7|1|L5|U|454
6ZM7|1|L5|C|455
*
6ZM7|1|L5|G|701
6ZM7|1|L5|U|702
6ZM7|1|L5|G|703
6ZM7|1|L5|C|704
6ZM7|1|L5|G|705
*
6ZM7|1|L5|C|1292
6ZM7|1|L5|G|1293
6ZM7|1|L5|A|1294
6ZM7|1|L5|C|1295
6ZM7|1|L5|G|1296

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a