3D structure

PDB id
6ZME (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCCCGGAC*GGGUG*UUAGAUGUC
Length
22 nucleotides
Bulged bases
6ZME|1|S2|G|1274, 6ZME|1|S2|G|1507, 6ZME|1|S2|U|1509
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZME|1|S2|G|1270
6ZME|1|S2|C|1271
6ZME|1|S2|C|1272
6ZME|1|S2|C|1273
6ZME|1|S2|G|1274
6ZME|1|S2|G|1275
6ZME|1|S2|A|1276
6ZME|1|S2|C|1277
*
6ZME|1|S2|G|1320
6ZME|1|S2|G|1321
6ZME|1|S2|G|1322
6ZME|1|S2|U|1323
6ZME|1|S2|G|1324
*
6ZME|1|S2|U|1504
6ZME|1|S2|U|1505
6ZME|1|S2|A|1506
6ZME|1|S2|G|1507
6ZME|1|S2|A|1508
6ZME|1|S2|U|1509
6ZME|1|S2|G|1510
6ZME|1|S2|U|1511
6ZME|1|S2|C|1512

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SK
40S ribosomal protein S10
Chain SP
40S ribosomal protein S15
Chain Sd
40S ribosomal protein S29
Chain Sf
Ubiquitin-40S ribosomal protein S27a

Coloring options:

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