J3_6ZME_026
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCCGGAC*GGGUG*UUAGAUGUC
- Length
- 22 nucleotides
- Bulged bases
- 6ZME|1|S2|G|1274, 6ZME|1|S2|G|1507, 6ZME|1|S2|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZME|1|S2|G|1270
6ZME|1|S2|C|1271
6ZME|1|S2|C|1272
6ZME|1|S2|C|1273
6ZME|1|S2|G|1274
6ZME|1|S2|G|1275
6ZME|1|S2|A|1276
6ZME|1|S2|C|1277
*
6ZME|1|S2|G|1320
6ZME|1|S2|G|1321
6ZME|1|S2|G|1322
6ZME|1|S2|U|1323
6ZME|1|S2|G|1324
*
6ZME|1|S2|U|1504
6ZME|1|S2|U|1505
6ZME|1|S2|A|1506
6ZME|1|S2|G|1507
6ZME|1|S2|A|1508
6ZME|1|S2|U|1509
6ZME|1|S2|G|1510
6ZME|1|S2|U|1511
6ZME|1|S2|C|1512
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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