J3_6ZME_031

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6ZME|1|L5|A|218, 6ZME|1|L5|G|219, 6ZME|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|C|196
6ZME|1|L5|A|197
6ZME|1|L5|A|198
6ZME|1|L5|G|199
*
6ZME|1|L5|C|215
6ZME|1|L5|C|216
6ZME|1|L5|C|217
6ZME|1|L5|A|218
6ZME|1|L5|G|219
6ZME|1|L5|C|220
6ZME|1|L5|C|221
6ZME|1|L5|C|222
6ZME|1|L5|G|223
6ZME|1|L5|U|224
6ZME|1|L5|G|225
6ZME|1|L5|G|226
6ZME|1|L5|A|227
6ZME|1|L5|C|228
*
6ZME|1|L5|G|240
6ZME|1|L5|G|241
6ZME|1|L5|U|242
6ZME|1|L5|A|243
6ZME|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26