J3_6ZMI_003
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG
- Length
- 31 nucleotides
- Bulged bases
- 6ZMI|1|L5|C|967, 6ZMI|1|L5|C|968, 6ZMI|1|L5|C|969, 6ZMI|1|L5|U|971, 6ZMI|1|L5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|L5|C|712
6ZMI|1|L5|C|713
*
6ZMI|1|L5|G|955
6ZMI|1|L5|A|956
6ZMI|1|L5|G|957
6ZMI|1|L5|G|958
6ZMI|1|L5|G|959
6ZMI|1|L5|A|960
6ZMI|1|L5|G|961
6ZMI|1|L5|C|962
6ZMI|1|L5|G|963
6ZMI|1|L5|A|964
6ZMI|1|L5|G|965
6ZMI|1|L5|A|966
6ZMI|1|L5|C|967
6ZMI|1|L5|C|968
6ZMI|1|L5|C|969
6ZMI|1|L5|G|970
6ZMI|1|L5|U|971
6ZMI|1|L5|C|972
6ZMI|1|L5|G|973
6ZMI|1|L5|C|974
6ZMI|1|L5|C|975
6ZMI|1|L5|G|976
*
6ZMI|1|L5|C|1278
6ZMI|1|L5|A|1279
6ZMI|1|L5|C|1280
6ZMI|1|L5|G|1281
6ZMI|1|L5|G|1282
6ZMI|1|L5|G|1283
6ZMI|1|L5|G|1284
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein L7
- Chain Le
- 60S ribosomal protein L32
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