J3_6ZMI_010

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|L5|A|2551
6ZMI|1|L5|G|2552
6ZMI|1|L5|A|2553
6ZMI|1|L5|U|2554
6ZMI|1|L5|G|2555
*
6ZMI|1|L5|C|2572
6ZMI|1|L5|A|2573
6ZMI|1|L5|G|2574
6ZMI|1|L5|U|2575
*
6ZMI|1|L5|A|2757
6ZMI|1|L5|G|2758
6ZMI|1|L5|G|2759
6ZMI|1|L5|G|2760
6ZMI|1|L5|U|2761
6ZMI|1|L5|G|2762
6ZMI|1|L5|U|2763
6ZMI|1|L5|A|2764
6ZMI|1|L5|A|2765
6ZMI|1|L5|A|2766
6ZMI|1|L5|U|2767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27