J3_6ZMI_015

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6ZMI|1|L5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMI|1|L5|C|4970
6ZMI|1|L5|A|4971
6ZMI|1|L5|U|4972
*
6ZMI|1|L5|G|4986
6ZMI|1|L5|C|4987
6ZMI|1|L5|U|4988
6ZMI|1|L5|U|4989
6ZMI|1|L5|C|4990
6ZMI|1|L5|U|4991
*
6ZMI|1|L5|A|5060
6ZMI|1|L5|A|5061
6ZMI|1|L5|G|5062
6ZMI|1|L5|G|5063

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31