3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
6ZMI|1|S2|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZMI_021 not in the Motif Atlas
Homologous match to J3_4V88_033
Geometric discrepancy: 0.0895
The information below is about J3_4V88_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38616.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

6ZMI|1|S2|A|938
6ZMI|1|S2|U|939
6ZMI|1|S2|U|940
6ZMI|1|S2|C|941
*
6ZMI|1|S2|G|985
6ZMI|1|S2|G|986
6ZMI|1|S2|A|987
6ZMI|1|S2|C|988
6ZMI|1|S2|C|989
6ZMI|1|S2|A|990
6ZMI|1|S2|G|991
6ZMI|1|S2|A|992
6ZMI|1|S2|G|993
*
6ZMI|1|S2|C|1000
6ZMI|1|S2|A|1001
6ZMI|1|S2|U|1002
6ZMI|1|S2|U|1003
6ZMI|1|S2|U|1004

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain Lp
60S ribosomal protein L37a
Chain SB
40S ribosomal protein S3a
Chain SN
40S ribosomal protein S13
Chain SO
40S ribosomal protein S14
Chain Sa
40S ribosomal protein S26

Coloring options:


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