3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CUGGC*GGACAAG*CCCGAGAUUG
Length
22 nucleotides
Bulged bases
6ZMI|1|S2|U|1477
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZMI|1|S2|C|1391
6ZMI|1|S2|U|1392
6ZMI|1|S2|G|1393
6ZMI|1|S2|G|1394
6ZMI|1|S2|C|1395
*
6ZMI|1|S2|G|1450
6ZMI|1|S2|G|1451
6ZMI|1|S2|A|1452
6ZMI|1|S2|C|1453
6ZMI|1|S2|A|1454
6ZMI|1|S2|A|1455
6ZMI|1|S2|G|1456
*
6ZMI|1|S2|C|1470
6ZMI|1|S2|C|1471
6ZMI|1|S2|C|1472
6ZMI|1|S2|G|1473
6ZMI|1|S2|A|1474
6ZMI|1|S2|G|1475
6ZMI|1|S2|A|1476
6ZMI|1|S2|U|1477
6ZMI|1|S2|U|1478
6ZMI|1|S2|G|1479

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
40S ribosomal protein S3
Chain SF
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S16
Chain SR
40S ribosomal protein S17
Chain SU
40S ribosomal protein S20
Chain Sc
40S ribosomal protein S28
Chain Sd
40S ribosomal protein S29
Chain Sg
Receptor of activated protein C kinase 1

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