3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CAGUC*GUGCG*CGACG
Length
15 nucleotides
Bulged bases
6ZMI|1|L5|C|704, 6ZMI|1|L5|C|1295
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZMI|1|L5|C|451
6ZMI|1|L5|A|452
6ZMI|1|L5|G|453
6ZMI|1|L5|U|454
6ZMI|1|L5|C|455
*
6ZMI|1|L5|G|701
6ZMI|1|L5|U|702
6ZMI|1|L5|G|703
6ZMI|1|L5|C|704
6ZMI|1|L5|G|705
*
6ZMI|1|L5|C|1292
6ZMI|1|L5|G|1293
6ZMI|1|L5|A|1294
6ZMI|1|L5|C|1295
6ZMI|1|L5|G|1296

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LE
60S ribosomal protein L6
Chain Le
60S ribosomal protein L32
Chain Lf
60S ribosomal protein L35a

Coloring options:

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