J3_6ZMI_035
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGUC*GUGCG*CGACG
- Length
- 15 nucleotides
- Bulged bases
- 6ZMI|1|L5|C|704, 6ZMI|1|L5|C|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|L5|C|451
6ZMI|1|L5|A|452
6ZMI|1|L5|G|453
6ZMI|1|L5|U|454
6ZMI|1|L5|C|455
*
6ZMI|1|L5|G|701
6ZMI|1|L5|U|702
6ZMI|1|L5|G|703
6ZMI|1|L5|C|704
6ZMI|1|L5|G|705
*
6ZMI|1|L5|C|1292
6ZMI|1|L5|G|1293
6ZMI|1|L5|A|1294
6ZMI|1|L5|C|1295
6ZMI|1|L5|G|1296
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
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