J3_6ZMI_045
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAGCGUAACGGCUAUCACAU*GAGACC*GU
- Length
- 29 nucleotides
- Bulged bases
- 6ZMI|1|CC|C|16, 6ZMI|1|CC|G|17, 6ZMI|1|CC|G|18, 6ZMI|1|CC|C|19, 6ZMI|1|CC|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZMI|1|CC|A|7
6ZMI|1|CC|U|8
6ZMI|1|CC|A|9
6ZMI|1|CC|G|10
6ZMI|1|CC|C|11
6ZMI|1|CC|G|12
6ZMI|1|CC|U|13
6ZMI|1|CC|A|14
6ZMI|1|CC|A|15
6ZMI|1|CC|C|16
6ZMI|1|CC|G|17
6ZMI|1|CC|G|18
6ZMI|1|CC|C|19
6ZMI|1|CC|U|20
6ZMI|1|CC|A|21
6ZMI|1|CC|U|22
6ZMI|1|CC|C|23
6ZMI|1|CC|A|24
6ZMI|1|CC|C|25
6ZMI|1|CC|A|26
6ZMI|1|CC|U|27
*
6ZMI|1|CC|G|43
6ZMI|1|CC|A|44
6ZMI|1|CC|G|45
6ZMI|1|CC|A|46
6ZMI|1|CC|C|47
6ZMI|1|CC|C|48
*
6ZMI|1|CC|G|64
6ZMI|1|CC|U|65
Current chains
- Chain CC
- tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lo
- 60S ribosomal protein L36a
- Chain Lz
- 60S ribosomal protein L10a
- Chain SF
- 40S ribosomal protein S5
Coloring options: