J3_6ZMO_003

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6ZMO|1|L5|G|965, 6ZMO|1|L5|C|967, 6ZMO|1|L5|C|968, 6ZMO|1|L5|C|969, 6ZMO|1|L5|U|971, 6ZMO|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|712
6ZMO|1|L5|C|713
*
6ZMO|1|L5|G|955
6ZMO|1|L5|A|956
6ZMO|1|L5|G|957
6ZMO|1|L5|G|958
6ZMO|1|L5|G|959
6ZMO|1|L5|A|960
6ZMO|1|L5|G|961
6ZMO|1|L5|C|962
6ZMO|1|L5|G|963
6ZMO|1|L5|A|964
6ZMO|1|L5|G|965
6ZMO|1|L5|A|966
6ZMO|1|L5|C|967
6ZMO|1|L5|C|968
6ZMO|1|L5|C|969
6ZMO|1|L5|G|970
6ZMO|1|L5|U|971
6ZMO|1|L5|C|972
6ZMO|1|L5|G|973
6ZMO|1|L5|C|974
6ZMO|1|L5|C|975
6ZMO|1|L5|G|976
*
6ZMO|1|L5|C|1278
6ZMO|1|L5|A|1279
6ZMO|1|L5|C|1280
6ZMO|1|L5|G|1281
6ZMO|1|L5|G|1282
6ZMO|1|L5|G|1283
6ZMO|1|L5|G|1284

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32