J3_6ZMO_010

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|A|2551
6ZMO|1|L5|G|2552
6ZMO|1|L5|A|2553
6ZMO|1|L5|U|2554
6ZMO|1|L5|G|2555
*
6ZMO|1|L5|C|2572
6ZMO|1|L5|A|2573
6ZMO|1|L5|G|2574
6ZMO|1|L5|U|2575
*
6ZMO|1|L5|A|2757
6ZMO|1|L5|G|2758
6ZMO|1|L5|G|2759
6ZMO|1|L5|G|2760
6ZMO|1|L5|U|2761
6ZMO|1|L5|G|2762
6ZMO|1|L5|U|2763
6ZMO|1|L5|A|2764
6ZMO|1|L5|A|2765
6ZMO|1|L5|A|2766
6ZMO|1|L5|U|2767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27