J3_6ZMO_031

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAGCGUAACGGCUAUCACAU*GAGACC*GU

Length

29 nucleotides

Bulged bases

6ZMO|1|CC|C|16, 6ZMO|1|CC|G|17, 6ZMO|1|CC|G|18, 6ZMO|1|CC|C|19, 6ZMO|1|CC|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|CC|A|7
6ZMO|1|CC|U|8
6ZMO|1|CC|A|9
6ZMO|1|CC|G|10
6ZMO|1|CC|C|11
6ZMO|1|CC|G|12
6ZMO|1|CC|U|13
6ZMO|1|CC|A|14
6ZMO|1|CC|A|15
6ZMO|1|CC|C|16
6ZMO|1|CC|G|17
6ZMO|1|CC|G|18
6ZMO|1|CC|C|19
6ZMO|1|CC|U|20
6ZMO|1|CC|A|21
6ZMO|1|CC|U|22
6ZMO|1|CC|C|23
6ZMO|1|CC|A|24
6ZMO|1|CC|C|25
6ZMO|1|CC|A|26
6ZMO|1|CC|U|27
*
6ZMO|1|CC|G|43
6ZMO|1|CC|A|44
6ZMO|1|CC|G|45
6ZMO|1|CC|A|46
6ZMO|1|CC|C|47
6ZMO|1|CC|C|48
*
6ZMO|1|CC|G|64
6ZMO|1|CC|U|65

Current chains

Chain CC

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lo

60S ribosomal protein L36a

Chain Lz

60S ribosomal protein L10a

Chain SF

40S ribosomal protein S5