J3_6ZMO_032

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6ZMO|1|L5|A|218, 6ZMO|1|L5|G|219, 6ZMO|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|196
6ZMO|1|L5|A|197
6ZMO|1|L5|A|198
6ZMO|1|L5|G|199
*
6ZMO|1|L5|C|215
6ZMO|1|L5|C|216
6ZMO|1|L5|C|217
6ZMO|1|L5|A|218
6ZMO|1|L5|G|219
6ZMO|1|L5|C|220
6ZMO|1|L5|C|221
6ZMO|1|L5|C|222
6ZMO|1|L5|G|223
6ZMO|1|L5|U|224
6ZMO|1|L5|G|225
6ZMO|1|L5|G|226
6ZMO|1|L5|A|227
6ZMO|1|L5|C|228
*
6ZMO|1|L5|G|240
6ZMO|1|L5|G|241
6ZMO|1|L5|U|242
6ZMO|1|L5|A|243
6ZMO|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26