J3_6ZOJ_002
3D structure
- PDB id
- 6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGA*UUAAGA*UA
- Length
- 12 nucleotides
- Bulged bases
- 6ZOJ|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZOJ|1|2|U|682
6ZOJ|1|2|G|683
6ZOJ|1|2|G|684
6ZOJ|1|2|A|685
*
6ZOJ|1|2|U|917
6ZOJ|1|2|U|918
6ZOJ|1|2|A|919
6ZOJ|1|2|A|920
6ZOJ|1|2|G|921
6ZOJ|1|2|A|922
*
6ZOJ|1|2|U|1022
6ZOJ|1|2|A|1023
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S7
- Chain L
- 40S ribosomal protein S11
- Chain N
- 40S ribosomal protein S13
- Chain W
- 40S ribosomal protein S15a
- Chain X
- 40S ribosomal protein S23
- Chain b
- 40S ribosomal protein S27
Coloring options: