J3_6ZOJ_004

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

6ZOJ|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZOJ_004 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1055

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6ZOJ|1|2|A|938
6ZOJ|1|2|U|939
6ZOJ|1|2|U|940
6ZOJ|1|2|C|941
*
6ZOJ|1|2|G|985
6ZOJ|1|2|G|986
6ZOJ|1|2|A|987
6ZOJ|1|2|C|988
6ZOJ|1|2|C|989
6ZOJ|1|2|A|990
6ZOJ|1|2|G|991
6ZOJ|1|2|A|992
6ZOJ|1|2|G|993
*
6ZOJ|1|2|C|1000
6ZOJ|1|2|A|1001
6ZOJ|1|2|U|1002
6ZOJ|1|2|U|1003
6ZOJ|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26