J3_6ZOK_004

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

6ZOK|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZOK_004 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1053

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6ZOK|1|2|A|938
6ZOK|1|2|U|939
6ZOK|1|2|U|940
6ZOK|1|2|C|941
*
6ZOK|1|2|G|985
6ZOK|1|2|G|986
6ZOK|1|2|A|987
6ZOK|1|2|C|988
6ZOK|1|2|C|989
6ZOK|1|2|A|990
6ZOK|1|2|G|991
6ZOK|1|2|A|992
6ZOK|1|2|G|993
*
6ZOK|1|2|C|1000
6ZOK|1|2|A|1001
6ZOK|1|2|U|1002
6ZOK|1|2|U|1003
6ZOK|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26