J3_6ZP4_003

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUUUG

Length

20 nucleotides

Bulged bases

6ZP4|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZP4|1|2|C|937
6ZP4|1|2|A|938
6ZP4|1|2|U|939
6ZP4|1|2|U|940
6ZP4|1|2|C|941
*
6ZP4|1|2|G|985
6ZP4|1|2|G|986
6ZP4|1|2|A|987
6ZP4|1|2|C|988
6ZP4|1|2|C|989
6ZP4|1|2|A|990
6ZP4|1|2|G|991
6ZP4|1|2|A|992
6ZP4|1|2|G|993
*
6ZP4|1|2|C|1000
6ZP4|1|2|A|1001
6ZP4|1|2|U|1002
6ZP4|1|2|U|1003
6ZP4|1|2|U|1004
6ZP4|1|2|G|1005

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S26

Chain i

40S ribosomal protein S14

Chain m

40S ribosomal protein S13

Chain p

40S ribosomal protein S3a