J3_6ZQC_006

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUG

Length

16 nucleotides

Bulged bases

6ZQC|1|D3|A|1217, 6ZQC|1|D3|G|1218

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQC|1|D3|C|1215
6ZQC|1|D3|C|1216
6ZQC|1|D3|A|1217
6ZQC|1|D3|G|1218
6ZQC|1|D3|A|1219
6ZQC|1|D3|C|1220
*
6ZQC|1|D3|G|1263
6ZQC|1|D3|G|1264
6ZQC|1|D3|G|1265
6ZQC|1|D3|U|1266
6ZQC|1|D3|G|1267
6ZQC|1|D3|G|1268
*
6ZQC|1|D3|C|1441
6ZQC|1|D3|U|1442
6ZQC|1|D3|U|1443
6ZQC|1|D3|G|1448

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JF

Ribosomal RNA small subunit methyltransferase NEP1

Chain JH

Essential nuclear protein 1

Chain UB

Nucleolar complex protein 14