J3_6ZQD_003

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*CAGG*CUCGAU

Length

14 nucleotides

Bulged bases

6ZQD|1|D3|A|774

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQD|1|D3|A|760
6ZQD|1|D3|G|761
6ZQD|1|D3|A|762
6ZQD|1|D3|G|763
*
6ZQD|1|D3|C|773
6ZQD|1|D3|A|774
6ZQD|1|D3|G|775
6ZQD|1|D3|G|776
*
6ZQD|1|D3|C|784
6ZQD|1|D3|U|785
6ZQD|1|D3|C|786
6ZQD|1|D3|G|787
6ZQD|1|D3|A|788
6ZQD|1|D3|U|790

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CH

Ribosomal RNA-processing protein 9

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A

Chain DY

40S ribosomal protein S24-A